{"id":85,"date":"2022-03-16T05:04:44","date_gmt":"2022-03-16T05:04:44","guid":{"rendered":"http:\/\/localhost\/BIC-NII\/?page_id=85"},"modified":"2024-08-19T01:14:12","modified_gmt":"2024-08-18T19:44:12","slug":"facilities","status":"publish","type":"page","link":"http:\/\/202.54.249.134\/BIC-NII\/facilities\/","title":{"rendered":"Facilities"},"content":{"rendered":"\n

Softwares\/Tools:-<\/strong><\/p>\n\n\n\n

Open-Source<\/th><\/th>Commercial<\/th><\/tr><\/thead>
Bowtie2
bwa
STAR
SPAdes
Trinity
GATK
TB-Profiler and etc<\/td>		Autodock (CPU + GPU)
GROMACS
AlphaFold2
RoseTTAFold
ESMFold<\/td>		AMBER 16 and AMBER 22
Schrodinger (Life Science Suite)

EndNote
BioRender<\/td><\/tr><\/tbody><\/table><\/figure>\n\n\n\n

Computing Facilities<\/strong><\/p>\n\n\n\n

Machines<\/th>Specifications<\/th><\/tr><\/thead>
DELL PowerEdge R760 (No’s: 1)<\/td>Processor: 2x Intel(R) Xeon(R) Platinum 8452Y
CPU(s): 72
Graphics: NVIDIA L40 48GB<\/td><\/tr>
DELL PowerEdge R750 (No’s: 2)<\/td>Processor: 2x Intel(R) Xeon(R) Gold 5318Y CPU @ 2.10GHz
RAM: 256 GB
CPU(s): 48
Graphics: NVIDIA A100 PCIe 80GB<\/td><\/tr>
Tyrone Systems SDI100C3R-28 (No’s: 2)<\/td>Processor: 2x Intel(R) Xeon(R) Gold 5320 CPU @ 2.20GHz
RAM: 256 GB
CPU(s): 52
Storage: 10 TB SAS<\/td><\/tr>
FUJITSU PRIMERGY RX350 S8 (No’s: 1)<\/td>Processor: 2x Intel(R) Xeon(R) CPU E5-2667 v2 @ 3.30GHz
RAM: 256 GB
CPU(s): 16
Graphics: NVIDIA Tesla K20Xm 8GB x2<\/td><\/tr>
DELL PowerEdge R740 (No’s: 2)<\/td>Processor: 2x Intel(R) Xeon(R) Silver 4116 CPU @ 2.10GHz
RAM: 128 GB
CPU(s): 48
Graphics: NVIDIA Tesla V100 PCIe 16GB<\/td><\/tr>
Supermicro X9DRG-HF (No’s: 2)<\/td>Processor: 2x Intel(R) Xeon(R) CPU E5-2670 0 @ 2.60GHz
RAM: 64 GB
CPU(s): 16
Graphics: NVIDIA Tesla K20Xm 6GB x2<\/td><\/tr>
DELL Precision 3650 Tower (No’s: 1)<\/td>Processor: Intel(R) Core(TM) i7-10700 CPU @ 2.90GHz
RAM: 128 GB
CPU(s): 16
Graphics: NVIDIA RTX A4000 16GB<\/td><\/tr>
DELL Precision 3660 Tower (No’s: 1)<\/td>Processor: 13th Gen Intel(R) Core(TM) i9-13900
RAM: 128 GB
CPU(s): 24
Graphics: NVIDIA RTX 4080 Super 16GB<\/td><\/tr>
DELL Precision 3660 Tower (No’s: 3)<\/td>Processor: 13th Gen Intel(R) Core(TM) i9-13900
RAM: 128 GB
CPU(s): 24
Graphics: NVIDIA T1000 8GB<\/td><\/tr>
HP Z2 Tower G5 Workstation (No’s: 1)<\/td>Processor: Intel(R) Core(TM) i7-10700 CPU @ 2.90GHz
RAM: 128 GB
CPU(s): 16
Graphics: NVIDIA Quadro T1000 Mobile 4GB<\/td><\/tr>
FUJITSU CELSIUS R920 POWER (No’s: 1)<\/td>Processor: Intel(R) Xeon(R) CPU E5-2687W 0 @ 3.10GHz
RAM: 128 GB
CPU(s): 32
Graphics: NVIDIA Tesla C2050 & Quadro 4000<\/td><\/tr>
Other Workstation’s<\/td>No’s: 15 <\/td><\/tr><\/tbody><\/table><\/figure>\n\n\n\n

Storage<\/strong> Servers<\/strong><\/p>\n\n\n\n

Machines<\/th>Specifications<\/th><\/tr><\/thead>
TYRONE OPSLAG VERTA D4ZC-24D<\/td>Processor: 2x Intel\u00ae Xeon\u00ae Silver 4210R @ 2.40GHz
RAM: 128 GB \/ processor
Size: 30 TB SSD and 260 TB NL-SAS<\/td><\/tr>
DELL PowerVault NX3240 (No’s: 1)<\/td>Processor: Intel(R) Xeon(R) Silver 4114 CPU @ 2.20GHz
RAM: 64 GB
OS: Windows Storage Server 2016
Size: 90 TB<\/td><\/tr>
DELL PowerVault NX3240 (No’s: 1)<\/td>Processor: Intel(R) Xeon(R) Silver 4208 CPU @ 2.10GHz
RAM: 32 GB
OS: Windows Storage Server 2016
Size: 120 TB<\/td><\/tr><\/tbody><\/table><\/figure>\n\n\n\n

HPC Setup<\/strong><\/p>\n\n\n

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Network Facility<\/strong><\/p>\n\n\n\n